MOMD:
Mouse Oral Microbiome Database
Home
Taxonomy
Genomics
Tools
16S rRNA Gene Idnetification
BLAST Search Genomes
Download
Publication
MOMD Genome Explorer
Selected genome:
Escherichia coli
19428wD4_HM13
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
Quick search
:
Match all words
Match any words
Match exact phrase
Partially
In whole field
(leave empty to show all)
NCBI Genome Annotation:
contigs: 110
bases: 5,033,648 bps
CDS: 4,754
rRNA: 21
tRNA: 78
tmRNA: 1
Total number of protein coding genes annotated/found:
4,625
Display
20
50
100
All items per page
Items 1 - 20
🡆
click arrow to navigate by page or
of 232 pages
Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5033|JADGMH010000001.1
MBF0788379.1
Genome Viewer
NA
AA
1773/591
1-1774
type VI secretion system tip protein VgrG
SEQF5033|JADGMH010000001.1
MBF0788380.1
Genome Viewer
NA
AA
765/255
1787-2551
DUF4123 domain-containing protein
SEQF5033|JADGMH010000001.1
MBF0788381.1
Genome Viewer
NA
AA
525/175
3433-3957
DUF3304 domain-containing protein
SEQF5033|JADGMH010000001.1
MBF0788382.1
Genome Viewer
NA
AA
543/181
3942-4484
DUF3304 domain-containing protein
SEQF5033|JADGMH010000001.1
MBF0788383.1
Genome Viewer
NA
AA
2094/698
4469-6562
DUF2235 domain-containing protein
SEQF5033|JADGMH010000001.1
MBF0788384.1
Genome Viewer
NA
AA
504/168
7831-8334
hypothetical protein
SEQF5033|JADGMH010000001.1
MBF0788385.1
Genome Viewer
NA
AA
489/163
8428-8916
integrating conjugative element protein
SEQF5033|JADGMH010000001.1
MBF0788386.1
Genome Viewer
NA
AA
771/257
9957-9187
2-oxoglutaramate amidase
SEQF5033|JADGMH010000001.1
MBF0788387.1
Genome Viewer
NA
AA
474/158
10111-10584
C-lysozyme inhibitor
SEQF5033|JADGMH010000001.1
MBF0788388.1
Genome Viewer
NA
AA
2445/815
13071-10627
acyl-CoA dehydrogenase FadE
SEQF5033|JADGMH010000001.1
MBF0788389.1
Genome Viewer
NA
AA
579/193
13311-13889
D-sedoheptulose 7-phosphate isomerase
SEQF5033|JADGMH010000001.1
MBF0788390.1
Genome Viewer
NA
AA
768/256
14094-14861
class II glutamine amidotransferase
SEQF5033|JADGMH010000001.1
MBF0788391.1
Genome Viewer
NA
AA
741/247
15572-14832
murein L%2CD-transpeptidase
SEQF5033|JADGMH010000001.1
MBF0788392.1
Genome Viewer
NA
AA
750/250
15884-16633
C40 family peptidase
SEQF5033|JADGMH010000001.1
MBF0788393.1
Genome Viewer
NA
AA
498/166
16809-17306
REP-associated tyrosine transposase RayT
SEQF5033|JADGMH010000001.1
MBF0788394.1
Genome Viewer
NA
AA
345/115
17645-17301
hypothetical protein
SEQF5033|JADGMH010000001.1
MBF0788395.1
Genome Viewer
NA
AA
2094/698
19817-17724
flagellar biosynthesis protein FlhA
SEQF5033|JADGMH010000001.1
MBF0788396.1
Genome Viewer
NA
AA
1140/380
20940-19801
flagellar type III secretion system protein FlhB
SEQF5033|JADGMH010000001.1
MBF0788397.1
Genome Viewer
NA
AA
783/261
21712-20930
flagellar biosynthetic protein FliR
SEQF5033|JADGMH010000001.1
MBF0788398.1
Genome Viewer
NA
AA
273/91
21986-21714
flagellar type III secretion system protein FliQ
Items 1 - 20
🡆
click arrow to navigate by page or
of 232 pages
Genome Viewer
JBrowse Genome Viewer
* Click GI,UID,Gene Product to go to NCBI record
^ Click column names to toggle sorting
Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
Powered by